PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003240.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YB
Protein Properties Length: 196aa    MW: 21194 Da    PI: 7.9344
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003240.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB187.11.3e-5825122198
                           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedy 79 
                                     vreqdr+lPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy
  FANhyb_rscf00003240.1.g00001.1  25 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDY 103
                                     69***************************************************************************** PP

                           NF-YB  80 veplkvylkkyrelegekk 98 
                                     ++plkvyl+kyre+eg++k
  FANhyb_rscf00003240.1.g00001.1 104 IDPLKVYLAKYREMEGDTK 122
                                     ****************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.5E-5622139IPR009072Histone-fold
SuperFamilySSF471134.35E-4128135IPR009072Histone-fold
PfamPF008084.4E-283195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.4E-215977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.4E-217896No hitNo description
PRINTSPR006153.4E-2197115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAEGPASPGG GGSHDSGEHS PRSNVREQDR YLPIANISRI MKKALPANGK IAKDAKETVQ  60
ECVSEFISFI TSEASDKCQR EKRKTINGDD LLWAMATLGF EDYIDPLKVY LAKYREMEGD  120
TKGSGKGGDS SSKKEAQPSA IAQIPHQGSF SQGATYSNSQ VISSPLSLCY LFVAASYQIL  180
IISFACMKGY KLILGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A9e-4826116393NF-YB
4awl_B9e-4826116494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A9e-4826116494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304397.11e-117PREDICTED: nuclear transcription factor Y subunit B-10-like
SwissprotQ67XJ24e-85NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLV7CX891e-102V7CX89_PHAVU; Uncharacterized protein (Fragment)
TrEMBLV7CZA71e-102V7CZA7_PHAVU; Uncharacterized protein
STRINGGLYMA03G33490.11e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.12e-76nuclear factor Y, subunit B10